Acidovorax

Genus nameAcidovorax
SourcePublished
Alternative namesAcidivorax; Acidovorax avenae, A. delafieldii and A. facilis were formerly Pseudomonas avenae, P. delafieldii and P. facilis.
NCBI taxonomy ID12916

Taxonomy

KingdomBacteria
GenusAcidovorax

16S gene copy number3'
GenomesYes123456789

 In situOther
Filamentous1012
Hydrophobic cell surface1516


In situ detection of representatives of the genus Acidovorax in activated sludge of a sewage treatment plant (Munchen I, Großlappen). Viewed by epifluorescence microscopy. The fixed sample was simultaneously hybridized with the Cy3-labeled probe ACI145. Bar indicates 10 microns. - Source:10

Autotroph/Mixotroph
Aerobic heterotroph
Nitrite reduction
Fatty acids
Sugars
Proteins/Amino acids

POSNEGVariableNot assessed

Description

Acetate-utilizing denitrifiers in activated sludge 11. Cells are rods, which can be straight to slightly curved, or rods to ovoid or round cells (Acidovorax defluvii) 12. Acidovorax are aerobic, chemoorganotrophs, although some strains are able to grow anaerobically using nitrate as terminal electron acceptor 12. Autotrophic growth is possible for some strains where hydrogen is used as an energy source 12 13. In activated sludge, Acidovorax have been demonstrated to denitrify with acetate 11.

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Diversity

Acidovorax delafieldii, formerly Pseudomonas delafieldii

FISH probes

ACI208 14, ACI145 10

Metabolism

 In situOther
Autotroph/Mixotroph1213
AOB
NOB
Anammox
Aerobic Heterotroph121317181920
PAO
GAO
Nitrite Reduction11121320
Sulphate Reduction
Fermentation12
Acetogen
Methanogen
Fatty Acids111013171819212223
Proteins/Amino Acids1013171819212223

Abundance Information

 10 % percentileMedian90 % percentile
Influent0.61.97.2
Activated Sludge0.10.51.6
Digester-Mesophilic0.10.30.6
Digester-Thermophilic0.10.10.3

Predominant InInfluent

References

[1] Tatusova, Ciufo, Fedorov, O'Neill, Tolstoy - RefSeq microbial genomes database: new representation and annotation strategy. - Nucleic Acids Res. 42(Database issue): D553-9. doi:10.1093/nar/gkt1274

[2] - NCBI genome database, NCBI id 12916 -

[3] Miura, Kusada, Kamagata, Hanada, Kimura - Genome Sequence of the Multiple-β-Lactam-Antibiotic-Resistant Bacterium Acidovorax sp. Strain MR-S7. - Genome Announc 1(4): . doi:10.1128/genomeA.00412-13

[4] Huang, Li, Rensing, Zhao, Johnstone, Wang, et al. - Genome sequence of the facultative anaerobic arsenite-oxidizing and nitrate-reducing bacterium Acidovorax sp. strain NO1. - J. Bacteriol. 194(6): 1635-6. doi:10.1128/JB.06814-11

[5] Wang, Yang, Zhao - Genome Sequence of a Copper-Resistant Strain of Acidovorax citrulli Causing Bacterial Fruit Blotch of Melons. - Genome Announc 3(2): . doi:10.1128/genomeA.00310-15

[6] Wang, Sun, Yang, Zhao - Genome Sequence of Acidovorax citrulli Group 1 Strain pslb65 Causing Bacterial Fruit Blotch of Melons. - Genome Announc 3(2): . doi:10.1128/genomeA.00327-15

[7] Yoshii, Omatsu, Katayama, Koyama, Mizutani, Moriyama, et al. - Two types of genetic carrier, the IncP genomic island and the novel IncP-1β plasmid, for the aac(2')-IIa gene that confers kasugamycin resistance in Acidovorax avenae ssp. avenae. - Mol. Plant Pathol. 16(3): 288-300. doi:10.1111/mpp.12182

[8] Xie, Zhang, Liu, Lou, Tian, Li, et al. - Genome sequence of the rice-pathogenic bacterium Acidovorax avenae subsp. avenae RS-1. - J. Bacteriol. 193(18): 5013-4. doi:10.1128/JB.05594-11

[9] Byrne-Bailey, Weber, Chair, Bose, Knox, Spanbauer, et al. - Completed genome sequence of the anaerobic iron-oxidizing bacterium Acidovorax ebreus strain TPSY. - J. Bacteriol. 192(5): 1475-6. doi:10.1128/JB.01449-09

[10] Schulze, Spring, Amann, Huber, Ludwig, Schleifer, et al. - Genotypic diversity of Acidovorax strains isolated from activated sludge and description of Acidovorax defluvii sp. nov. - Syst. Appl. Microbiol. 22(2): 205-14. doi:10.1016/S0723-2020(99)80067-8

[11] Ginige, Keller, Blackall - Investigation of an acetate-fed denitrifying microbial community by stable isotope probing, full-cycle rRNA analysis, and fluorescent in situ hybridization-microautoradiography. - Appl. Environ. Microbiol. 71(12): 8683-91. doi:10.1128/AEM.71.12.8683-8691.2005

[12] Willems, A. (2014) In: E. Rosenberg., E.F. DeLong., S. Lory., E. Stackebrandt., F. Thompson. The Prokaryotes: Alphaproteobacteria and Betaproteobacteria. Pp777-851. Springer, Berlin, Heidelberg. - Willems 2014 -

[13] Willems, Falsen, Pot, Jantzen, Hoste, Vandamme, et al. - Acidovorax, a new genus for Pseudomonas facilis, Pseudomonas delafieldii, E. Falsen (EF) group 13, EF group 16, and several clinical isolates, with the species Acidovorax facilis comb. nov., Acidovorax delafieldii comb. nov., and Acidovorax temperans sp. nov. - Int. J. Syst. Bacteriol. 40(4): 384-98. doi:10.1099/00207713-40-4-384

[14] Amann, R., Ludvig, W., Schulze, R., Spring, S., Moore, E., Schleifer, K-H. (1996) Rrna- targeted oligonucleotides probes for the identification of genuine and former pseudomonads. System Appl. Microbiol. 19: 501-509. - Amann Et Al 1996 -

[15] Rickard, McBain, Stead, Gilbert - Shear rate moderates community diversity in freshwater biofilms. - Appl. Environ. Microbiol. 70(12): 7426-35. doi:10.1128/AEM.70.12.7426-7435.2004

[16] Lemmer, H., Lind, G., Schade, M., and Ziegelmayer, B. (1998) Autecology of scum producing bacteria. Wat. Sci. Tech. 37(4-5): 527-530. - Lemmer Et Al 1998 -

[17] Gardan, Dauga, Prior, Gillis, Saddler - Acidovorax anthurii sp. nov., a new phytopathogenic bacterium which causes bacterial leaf-spot of anthurium. - Int. J. Syst. Evol. Microbiol. 50 Pt 1(): 235-46. doi:10.1099/00207713-50-1-235

[18] Choi, Kim, Roh, Bae - Acidovorax soli sp. nov., isolated from landfill soil. - Int. J. Syst. Evol. Microbiol. 60(Pt 12): 2715-8. doi:10.1099/ijs.0.019661-0

[19] Gardan, Stead, Dauga, Gillis - Acidovorax valerianellae sp. nov., a novel pathogen of lamb's lettuce [Valerianella locusta (L.) Laterr]. - Int. J. Syst. Evol. Microbiol. 53(Pt 3): 795-800. doi:10.1099/ijs.0.02404-0

[20] Vaneechoutte, Janssens, Avesani, Delmée, Deschaght - Description of Acidovorax wautersii sp. nov. to accommodate clinical isolates and an environmental isolate, most closely related to Acidovorax avenae. - Int. J. Syst. Evol. Microbiol. 63(Pt 6): 2203-6. doi:10.1099/ijs.0.046102-0

[21] Willems, Goor, Thielemans, Gillis, Kersters, De Ley, et al. - Transfer of several phytopathogenic Pseudomonas species to Acidovorax as Acidovorax avenae subsp. avenae subsp. nov., comb. nov., Acidovorax avenae subsp. citrulli, Acidovorax avenae subsp. cattleyae, and Acidovorax konjaci. - Int. J. Syst. Bacteriol. 42(1): 107-19. doi:10.1099/00207713-42-1-107

[22] Heylen, Lebbe, De Vos - Acidovorax caeni sp. nov., a denitrifying species with genetically diverse isolates from activated sludge. - Int. J. Syst. Evol. Microbiol. 58(Pt 1): 73-7. doi:10.1099/ijs.0.65387-0

[23] Li, Rothballer, Schmid, Esperschütz, Hartmann - Acidovorax radicis sp. nov., a wheat-root-colonizing bacterium. - Int. J. Syst. Evol. Microbiol. 61(Pt 11): 2589-94. doi:10.1099/ijs.0.025296-0

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Citing MiDAS: McIlroy S.J., Saunders A.M., Albertsen M., Nierychlo M., McIlroy B., Hansen A.A., Karst S.M., Nielsen J.L., Nielsen P.H. (2015) MiDAS: the field guide to the microbes of activated sludge. Database, Vol. 2015

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