Zymomonas

Genus nameZymomonas
SourcePublished
Alternative names
NCBI taxonomy ID541

Taxonomy

KingdomBacteria
GenusZymomonas

16S gene copy number2-7
GenomesYes12345678910

 In situOther
Filamentous1112
Hydrophobic cell surface13


Fermentation
Sugars

POSNEGVariableNot assessed

Description

Anaerobic, fermenters with rod shaped or filamentous morphology 11 12. The in situ physiology of the genus in activated sludge has not been determined.

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Metabolism

 In situOther
Autotroph/Mixotroph
AOB
NOB
Anammox
Aerobic Heterotroph1112
PAO
GAO
Nitrite Reduction
Sulphate Reduction
Fermentation1112
Acetogen
Methanogen
Fatty Acids
Sugars1112
Proteins/Amino Acids11

Abundance Information

 10 % percentileMedian90 % percentile
Influent000
Activated Sludge000
Digester-Mesophilic000
Digester-Thermophilic000

Predominant In-

References

[1] - NCBI genome database, NCBI id 541 -

[2] Kouvelis, Teshima, Bruce, Detter, Tapia, Han, et al. - Finished Genome of Zymomonas mobilis subsp. mobilis Strain CP4, an Applied Ethanol Producer. - Genome Announc 2(1): . doi:10.1128/genomeA.00845-13

[3] Desiniotis, Kouvelis, Davenport, Bruce, Detter, Tapia, et al. - Complete genome sequence of the ethanol-producing Zymomonas mobilis subsp. mobilis centrotype ATCC 29191. - J. Bacteriol. 194(21): 5966-7. doi:10.1128/JB.01398-12

[4] Zhao, Bai, Zhao, Yang, Bai - Draft genome sequence of the flocculating Zymomonas mobilis strain ZM401 (ATCC 31822). - J. Bacteriol. 194(24): 7008-9. doi:10.1128/JB.01947-12

[5] Pappas, Kouvelis, Saunders, Brettin, Bruce, Detter, et al. - Genome sequence of the ethanol-producing Zymomonas mobilis subsp. mobilis lectotype strain ATCC 10988. - J. Bacteriol. 193(18): 5051-2. doi:10.1128/JB.05395-11

[6] Kouvelis, Davenport, Brettin, Bruce, Detter, Han, et al. - Genome sequence of the ethanol-producing Zymomonas mobilis subsp. pomaceae lectotype strain ATCC 29192. - J. Bacteriol. 193(18): 5049-50. doi:10.1128/JB.05273-11

[7] Kouvelis, Saunders, Brettin, Bruce, Detter, Han, et al. - Complete genome sequence of the ethanol producer Zymomonas mobilis NCIMB 11163. - J. Bacteriol. 191(22): 7140-1. doi:10.1128/JB.01084-09

[8] Yang, Pappas, Hauser, Land, Chen, Hurst, et al. - Improved genome annotation for Zymomonas mobilis. - Nat. Biotechnol. 27(10): 893-4. doi:10.1038/nbt1009-893

[9] Seo, Chong, Park, Yoon, Jung, Kim, et al. - The genome sequence of the ethanologenic bacterium Zymomonas mobilis ZM4. - Nat. Biotechnol. 23(1): 63-8. doi:10.1038/nbt1045

[10] Arvanitis, Pappas, Kolios, Afendra, Typas, Drainas, et al. - Characterization and replication properties of the Zymomonas mobilis ATCC 10988 plasmids pZMO1 and pZMO2. - Plasmid 44(2): 127-37. doi:10.1006/plas.2000.1480

[11] De Ley, J., and Swings, J. (1976) Phenotypic description, numerical analysis, and proposal for an improved taxonomy and nomenclature of the genus Zymomonas kluyver and Van Niel 1936. Int. J. Syst. Bacteriol. 26(2): 146-157. - De Ley And Swings 1976 -

[12] Coton, Laplace, Auffray, Coton - Polyphasic study of Zymomonas mobilis strains revealing the existence of a novel subspecies Z. mobilis subsp. francensis subsp. nov., isolated from French cider. - Int. J. Syst. Evol. Microbiol. 56(Pt 1): 121-5. doi:10.1099/ijs.0.63732-0

[13] Zikmanis, P., Shakirova, L., Auzina, L., Andersone, I. (2007) Hydrophobicity of bacteria Zymomonas mobilis under varied environmental conditions. Process Biochemistry. 42(4): 745-750. - Zikmanis Et Al 2007 -

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The MiDAS taxonomy is a manual curation of the Silva database and is redistributed for non-commercial use only.

 

Citing MiDAS: McIlroy S.J., Saunders A.M., Albertsen M., Nierychlo M., McIlroy B., Hansen A.A., Karst S.M., Nielsen J.L., Nielsen P.H. (2015) MiDAS: the field guide to the microbes of activated sludge. Database, Vol. 2015

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